Uber-anatomy ontology

Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.

Ontology information

Ontology ID: uberon
Version: 2022-04-18
Number of terms: 20909
Last loaded: Thu May 12 15:40:46 GMT 2022

creator

0000-0002-9611-1279

0000-0002-1810-9886

0000-0002-7356-1779

0000-0001-9114-8737

0000-0002-6601-2165

0000-0003-3162-7490

0000-0003-3308-6245

0000-0001-5839-6798

0000-0001-7972-3866

Git repository

https://github.com/cmungall/uberon/

treat-xrefs-as-has-subclass

EV

OGES

NCIT

SCTID

EHDAA

treat-xrefs-as-reverse-genus-differentia

TAO part_of NCBITaxon:32443

OlatDv part_of NCBITaxon:8089

EMAPA part_of NCBITaxon:10090

ZFA part_of NCBITaxon:7954

MmusDv part_of NCBITaxon:10090

FBdv part_of NCBITaxon:7227

HBA part_of NCBITaxon:9606

DMBA part_of NCBITaxon:10090

MA part_of NCBITaxon:10090

DHBA part_of NCBITaxon:9606

TADS part_of NCBITaxon:6939

MBA part_of NCBITaxon:10090

XAO part_of NCBITaxon:8353

WBls part_of NCBITaxon:6237

HAO part_of NCBITaxon:7399

HsapDv part_of NCBITaxon:9606

PBA part_of NCBITaxon:9443

FBbt part_of NCBITaxon:7227

TGMA part_of NCBITaxon:44484

ZFS part_of NCBITaxon:7954

EHDAA2 part_of NCBITaxon:9606

AAO part_of NCBITaxon:8292

MFO part_of NCBITaxon:8089

SPD part_of NCBITaxon:6893

WBbt part_of NCBITaxon:6237

FMA part_of NCBITaxon:9606

bug database

https://github.com/obophenotype/uberon/issues/

derived from resource

ISBN:0683400088 Stedman's Medical Dictionary

Common_Upper_Mammalian_Brain_Ontology_(Cumbo)

ISBN:0073040584 Vertebrates, Kardong

aggregates VSAO from 16:07:2012

https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit

https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit

cl.owl

go.owl

palaeos.com

ISBN:9780397517251 Surgical anatomy of the hand and upper extremity. By James R. Doyle and Michael J. Botte

ISBN:0443065837 Human embryology, Larsen

https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#

ISBN:0123813611 Comparative Anatomy and Histology: A Mouse and Human Atlas, Treuting and Dintzis

aao.owl

aba.owl

efo.owl

ISBN:0226313379 Fins into Limbs: Evolution, Development, and Transformation, Hall

nifstd

ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader

www.brain-map.org

xao.owl

https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit

ISBN:0030229073 Invertebrate Zoology, Barnes

http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop

hp.owl

emapa.owl

aeo.owl

fbbt.owl

ISBN:1588903958 Principles and practice of pediatric neurosurgery By A. Leland Albright, P. David Adelson, Ian F. Pollack

vsao.owl

ISBN:1607950324 Craniofacial Embryogenetics & Development, 2nd edition, Sperber

ehdaa2.owl

tao.owl

PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen

bto.owl

ISBN:0471888893 Comparative Vertebrate Neuroanatomy: Evolution and Adaptation by Butler and Hodos

ISBN:1588900649 Color Atlas and Textbook of Human Anatomy: Nervous system and sensory organs By Werner Kahle, Michael Frotscher

fma.owl

caro.owl

aggregates TAO from 09:08:2012

aggregates AAO from 13:04:2012

ma.owl

bila.owl

MESH

ISBN:9780120749034 The laboratory rat

https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0

kupo.owl

dbpedia.org

vhog.owl

http://wiki.phenotypercn.org/wiki/August_2012_Notes

NIF-GrossAnatomy.owl

ISBN:9780878932504 Developmental Biology

ISBN:978-0-12-369548-2 Principles of Developmental Genetics, Sally A Moody

wbbt.owl

PMID:11433360 Placental development: lessons from mouse mutants

mp.owl

zfa.owl

contributor

0000-0003-1980-3228

0000-0001-7476-6306

Q85793053

Q4964264

0000-0002-1615-2899

0000-0001-8682-8754

0000-0001-9990-8331

0000-0002-5111-7263

0000-0002-8455-3213

0000-0001-7920-5321

pato-community

0000-0002-9818-3030

Q23809253

0000-0002-2244-7917

Q54985720

0000-0002-3437-3329

0000-0001-7958-3701

X

0000-0001-9107-0714

0000-0002-1572-1316

Q11695472

Q6983890

0000-0003-2105-2283

0000-0002-3467-2636

0000-0002-8688-6599

0000-0002-0819-0473

0000-0003-3691-0324

0000-0002-1604-3078

0000-0002-9900-7880

0000-0003-2338-2550

0000-0001-5889-4463

0000-0001-7433-0086

0000-0002-0956-8634

Q7650732

0000-0002-7073-9172

0000-0002-9415-5104

0000-0002-3734-1859

0000-0002-6490-7723

0000-0002-8406-3871

SVN repository

https://obo.svn.sourceforge.net/svnroot/obo/uberon/

treat-xrefs-as-equivalent

VSAO

BILA

CARO

OG

GO

AEO

BSPO

EFO

is referenced by

http://www.ncbi.nlm.nih.gov/pubmed/22293552

http://genomebiology.com/2012/13/1/R5

publisher

http://uberon.org

comment

Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]

Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]

Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/disjoint_union_over.owl>) VersionIRI(<null>))) [Axioms: 38 Logical Axioms: 38]

Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found.